DOGMA / Start Here

Reader’s Roadmap

Architecture route: Chapters 1–5, then Appendix B. Experimental route: Chapters 6–9 and 12. AGI and governance route: Chapters 8, 10, 11, and 13.

DOGMA Pipeline

Six local stages replace one monolithic attention operation

Advance through the canonical non-transformer computation from sequence to realized output.

Genome

HelixHash creates structural sequence representations.

G = H(sequence)


Ch.	Title	Research focus


1	The Six-Stage Pipeline	Encode, bind, regulate, propagate, express, and generate
2	HelixHash	Double-strand identity, motifs, local structure, and novelty
3	TERA	Persistent regime state, pressure signals, mutation policy, and control
4	TetraData and TetraMemory	Structured memory, local neighborhoods, and geometric hypotheses
5	CodonForge	Genomic programs, compiler semantics, and neural realization
6	Recursive Training	Candidate generation, quality-diversity, frozen gates, and promotion
7	Genomic Foundation Models	Data curricula, tokenization, cross-modal bridges, and evaluation
8	The Measured Baseline	Implemented architecture, failed generation probes, and next experiments
9	Post-Transformer Scaling	State-space models, efficient sequence processing, and scaling hypotheses
10	Paths Toward AGI	Definitions, transfer, retention, world models, and falsifiable milestones
11	Safety and Governance	Alignment, dual use, interpretability, and bounded recursive improvement
12	Reproducible Labs	Implementation, ablation, comparison, visualization, and reporting
13	Open Research Frontiers	What has been demonstrated, what remains unknown, and how to contribute

Architecture route: Chapters 1–5, then Appendix B.
Experimental route: Chapters 6–9 and 12.
AGI and governance route: Chapters 8, 10, 11, and 13.